Breakpoints¶
With a mate, the browser shows both sides of a call side by side. The breakpoint view joins them by their split reads and discordant pairs, and the circular view draws every structural variant of the tracks as a chord. In the clip, a chord tile picks the fusions and both breakpoints follow.
# on the jbrowse component
read_pairs_display: arcs # discordant pairs as arcs
views: [breakpoint, circular]
circular_categories: [Structural variants] # manifest categories the circle draws
locus_from:
data_collection_tag: fusions
chrom_column: chrom_a
start_column: pos_a
mate: {chrom_column: chrom_b, start_column: pos_b}
Used in the nf-core/rnafusion dashboard template and nf-core/oncoanalyser dashboard template.