CLI

Command-line tools for data ingestion, recipes, and templates.

The CLI is the depictio command, from pip install depictio. depictio-cli, its former name, still works as an alias.

Page	Description
Installation	Install the CLI and tell it which server to use
Usage	All CLI commands with options and examples
Python package installation	Run a Depictio server on your machine, without containers, with depictio local up
Nextflow trigger	Let a pipeline ingest its own results when it completes
Minimal YAML Config	Minimal project YAML to get started
Recipes	Data transformation recipes for bioinformatics pipelines
Templates	One-command project setup for nf-core pipelines