A modern open-source platform that transforms bioinformatics workflow outputs into interactive dashboards.

Workflow Ecosystem

Connect with standardized bioinformatics workflows from various platforms.

Snakemake Workflow Catalog

Live interactive demo - Try it!

The demo is running an "unauthenticated mode" to allow anyone to try it out without needing an account. However, you can create a temporary account to create your own projects and upload datasets.

Note: Accounts and related data will be reset after 1 hour to keep the demo environment clean.

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Live Demo

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Project Overview

The Challenge

Bioinformatics researchers face significant challenges managing and analyzing large-scale datasets from production workflows. Despite numerous available tools, there's a notable absence of platforms designed for seamless integration with production workflows.

Our Solution

Depictio addresses this gap with a generic, centralized platform that integrates workflow output data to build interactive dashboards. It provides scalable, flexible, and open-source solutions for researchers handling large datasets from any execution engine (Nextflow, Snakemake, Galaxy, R, etc.).

Key Features

Data Ingestion

• Client-side processing: Depictio-CLI allows local data scanning and processing, pushing results to S3 bucket
• Multiple formats: Support for Parquet, CSV, JSON, TSV using Polars and Delta Lake

Frontend & Visualization

• Customizable dashboards: Design and customize dashboards with ease
• Real-time interactivity: Dynamic data exploration with instant updates
• Project organization: Organize dashboards by projects for better management

System & Infrastructure

• Cloud-ready: Built for Kubernetes and Docker-Compose environments
• Open-source: Community-driven development with transparent deployment

Getting Started

Ready to get started with Depictio?

Docker Compose

Quickest way to get started

Recommended

Kubernetes

For production environments

Production

CLI Tools

For data ingestion and management

Tools

Funding

Depictio is developed with the support of academic and public funding, enabling us to provide a free and open-source platform for the bioinformatics community.

Marie Skłodowska-Curie Grant

This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 945405

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ARISE Programme

ARISE is a postdoctoral research programme for technology developers, hosted at EMBL.

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EMBL

The European Molecular Biology Laboratory is Europe's flagship laboratory for the life sciences.

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Academic Partners

SciLifeLab Data Centre

SciLifeLab Data Centre provides data-driven life science research infrastructure and expertise to accelerate open science in Sweden and beyond.

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