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Roadmap

What we have now

Data ingestion & data types supported

  • Data ingestion using Depictio-CLI (python package based typer) using YAML configuration file
  • Polars-compatible data format (Parquet, CSV, JSON, TSV) ingestion and transformation into Delta Lake format
  • Delta lake push to S3 bucket (on-premise or remote MinIO)

Authentication

  • Basic authentication (username/password) > register, login, logout
  • JWT token management
  • Public/private & API internal key creation
  • Profile management (change password)
  • Create CLI configuration through the web interface (YAML to be copy-pasted)

Dashboards management

  • Create a dashboard for a project
  • Edit name, duplicate, delete a dashboard
  • Make public/private a dashboard at the instance level

Dashboard design and interactivity

  • Dashboard design using generic components (figure, metrics card, interactive component, table)
  • Add/delete components
  • Resize and relayout components
  • Edit components (title, aggregation applied)
  • Duplicate components
  • Enable/disable interactivity
  • Enable/disable edit mode
  • Auto-save dashboard + manual save (trigger screenshot to be used as thumbnail)

Project management

  • Project management UI to list workflows and data collections
  • List and edit project permissions
  • Turn public/private a project

Admin

  • Admin interface to list and manage users (delete functionality only)
  • Admin interface to list projects
  • Admin interface to list dashboards

What we plan for the future

Data ingestion & data types supported

  • Support MultiQC report integration
  • Support for genome-browser tracks through JBrowse2 (e.g., VCF, BAM, BED, GFF)
  • Data ingestion template for heavily-used and standardized nf-core community workflows (depictio-cli scan --template nf-core/sarek .)

Authentication

  • OAuth2 authentication (Google, GitHub, etc.)
  • SSO/SAML authentication
  • Groups management

Dashboards management

  • Dashboard sharing with specific users or groups
  • Tagging system for dashboards)

Dashboard design and interactivity

  • Implement JBrowse2 component for genome browser tracks
  • High-dimensional data methods (e.g., UMAP, PCA, t-SNE)
  • Omics data visualization methods (e.g., Volcano plot, ...)
  • Markdown component
  • Extend interactive component (date, radio, ...)
  • Improve component (e.g., slider values range, figure styling and properties, etc.)
  • Add more grouping functionalities

Admin

  • Move admin interface to a dedicated FastAPI dashboard using FastAPI-Users and FastAPI-Admin
  • List and manage groups
  • Admin interface to list and manage API keys

UI

  • Improve UI/UX (e.g., loading spinner, error handling, etc.)
  • Upgrade dash to the latest version (v3)
  • Upgrade dash mantine components to the latest version (>v1.0)
  • Improve theme customization (night mode, colors, fonts) and CSS styling